Last updated: 2019-06-22

Checks: 2 0

Knit directory: BUS_notebooks_R/

This reproducible R Markdown analysis was created with workflowr (version 1.4.0). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

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Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility. The version displayed above was the version of the Git repository at the time these results were generated.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:

Ignored files:
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    BUS_notebooks_R.Rproj
    Ignored:    data/whitelist_v3.txt.gz
    Ignored:    output/out_pbmc1k/

Unstaged changes:
    Modified:   analysis/10xv2.Rmd
    Modified:   analysis/10xv3.Rmd
    Modified:   analysis/_site.yml

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These are the previous versions of the R Markdown and HTML files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view them.

File Version Author Date Message
html 6276894 Lambda Moses 2018-12-14 Build site.
html 2da3b35 Lambda Moses 2018-12-14 Build site.
Rmd 1fc3e91 Lambda Moses 2018-12-14 Publish 10xv2 notebook
Rmd 55164fb Lambda Moses 2018-12-14 Start workflowr project.

Example notebooks that converts output of kallisto bus into sparse matrix that can be used in downstream analyses such as with Seurat.