V0.39.3
31 July 2019
Changes from v0.39.2
whitelist
bustools whitelist
generates a whitelist based on the barcodes in a sorted BUS file.
project
The kallisto bus command maps reads to a set of transcripts. bustools project
takes as input a sorted BUS output and a transcript to gene map (tr2g file), and outputs a BUS file, a matrix.ec file, and a list of genes, which collectively map each read to a set of genes.
linker
bustools linker removes specified section of barcode in BUS files.
inspect
A report summarizing the contents of a sorted BUS file can be output either to standard out or to a JSON file for further analysis using bustools inspect.
capture
The capture command has been updated to capture not only on a list of transcripts, but also a list of barcodes or UMIs.
Some minor bugfixes
- Fixes issue #8 by not creating output directory
- Mismatches in error reporting